title: "Meta-analysis of genes"
subtitle: "Draft, 25-05-2025v6c"
output:
html_document:
toc: true
toc_float:
collapsed: false
smooth_scroll: false
code_folding: hide
number_sections: false
theme: spacelab
---
# MA_HC_Microglia_F {- .tabset .tabset-fade .tabset-pills}
```r
library(dplyr)
library(knitr)
library(DT)
load("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/MA_HC_Microglia_F.RData")
```ENSG00000000971
Statistics of ENSG00000000971 meta-analisys
kable(sig.genes.df['ENSG00000000971',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000000971 | CFH | -0.4533592 | -0.380909 | -0.3084587 | 0 | 0.5652728 | 0.4521435 | 0.0369651 | 0 | 0 | 1 | 0 | 0 | 21.51298 | 2 | 2 | syn52293442_hc | 0.5123777 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000000971_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000000971_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000000971_INFLUENCE.png")
ENSG00000033867
Statistics of ENSG00000033867 meta-analisys
kable(sig.genes.df['ENSG00000033867',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000033867 | SLC4A7 | 1.603496 | 1.845343 | 2.087191 | 0 | 0.4679271 | 0.7913907 | 0.1233937 | 0 | 0 | 1 | 0 | 0 | 46.48103 | 3 | 3 | non | 0.5431142 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000033867_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000033867_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000033867_INFLUENCE.png")
ENSG00000066084
Statistics of ENSG00000066084 meta-analisys
kable(sig.genes.df['ENSG00000066084',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000066084 | DIP2B | 0.8982492 | 1.089044 | 1.27984 | 0 | 0.9012656 | 0.6372248 | 0.0973463 | 0 | 0 | 1 | 0 | 0 | 25.51293 | 3 | 3 | syn52293442_hc | 0.4437213 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000066084_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000066084_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000066084_INFLUENCE.png")
ENSG00000073849
Statistics of ENSG00000073849 meta-analisys
kable(sig.genes.df['ENSG00000073849',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000073849 | ST6GAL1 | 0.816385 | 0.9302152 | 1.044045 | 0 | 1.260196 | 0.5325395 | 0.0580777 | 0 | 0 | 1 | 0 | 0 | 53.52682 | 3 | 3 | syn52293442_hc | 0.4326257 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000073849_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000073849_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000073849_INFLUENCE.png")
ENSG00000079819
Statistics of ENSG00000079819 meta-analisys
kable(sig.genes.df['ENSG00000079819',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000079819 | EPB41L2 | 0.8977388 | 1.007301 | 1.116864 | 0 | 1.609812 | 0.44713 | 0.0559002 | 0 | 0 | 1 | 0 | 0 | 68.20473 | 3 | 3 | syn52293442_hc | 0.4681627 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000079819_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000079819_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000079819_INFLUENCE.png")
ENSG00000107099
Statistics of ENSG00000107099 meta-analisys
kable(sig.genes.df['ENSG00000107099',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000107099 | DOCK8 | 1.106759 | 1.212355 | 1.317951 | 0 | 1.991963 | 0.3693607 | 0.0538764 | 0 | 0 | 1 | 0 | 0 | 107.4458 | 3 | 3 | GSE163577,syn52293442_hc | 0.2295531 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000107099_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000107099_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000107099_INFLUENCE.png")
ENSG00000117020
Statistics of ENSG00000117020 meta-analisys
kable(sig.genes.df['ENSG00000117020',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000117020 | AKT3 | 1.841572 | 2.14499 | 2.448408 | 0 | 0.0003523 | 0.9850245 | 0.1548078 | 0 | 0 | 1 | 0 | 0 | 39.74816 | 2 | 2 | non | 0.5309985 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000117020_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000117020_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000117020_INFLUENCE.png")
ENSG00000127528
Statistics of ENSG00000127528 meta-analisys
kable(sig.genes.df['ENSG00000127528',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000127528 | KLF2 | -0.6521791 | -0.5484801 | -0.444781 | 0 | 0.0458569 | 0.8304361 | 0.0529086 | 0 | 0 | 1 | 0 | 0 | 21.7715 | 2 | 2 | syn52293442_hc | 0.5179101 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000127528_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000127528_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000127528_INFLUENCE.png")
ENSG00000141526
Statistics of ENSG00000141526 meta-analisys
kable(sig.genes.df['ENSG00000141526',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000141526 | SLC16A3 | -0.9644226 | -0.832225 | -0.7000274 | 0 | 0.2844823 | 0.5937783 | 0.067449 | 0 | 0 | 1 | 0 | 0 | 31.24429 | 2 | 2 | syn52293442_hc | 0.513934 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000141526_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000141526_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000141526_INFLUENCE.png")
ENSG00000145685
Statistics of ENSG00000145685 meta-analisys
kable(sig.genes.df['ENSG00000145685',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000145685 | LHFPL2 | 1.04606 | 1.208264 | 1.370469 | 0 | 1.507397 | 0.4706226 | 0.0827591 | 0 | 0 | 1 | 0 | 0 | 44.28836 | 3 | 3 | GSE163577,syn52293442_hc | 0.2289186 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000145685_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000145685_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000145685_INFLUENCE.png")
ENSG00000154237
Statistics of ENSG00000154237 meta-analisys
kable(sig.genes.df['ENSG00000154237',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000154237 | LRRK1 | 1.077618 | 1.308441 | 1.539264 | 0 | 1.05164 | 0.5910705 | 0.1177691 | 0 | 0 | 1 | 0 | 0 | 25.16664 | 3 | 3 | non | 0.664106 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000154237_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000154237_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000154237_INFLUENCE.png")
ENSG00000166068
Statistics of ENSG00000166068 meta-analisys
kable(sig.genes.df['ENSG00000166068',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000166068 | SPRED1 | 1.136883 | 1.371549 | 1.606215 | 0 | 1.258299 | 0.5330449 | 0.1197298 | 0 | 0 | 1 | 0 | 0 | 26.77404 | 3 | 3 | syn52293442_hc | 0.445435 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000166068_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000166068_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000166068_INFLUENCE.png")
ENSG00000181722
Statistics of ENSG00000181722 meta-analisys
kable(sig.genes.df['ENSG00000181722',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000181722 | ZBTB20 | 0.8994633 | 1.049996 | 1.200529 | 0 | 1.276336 | 0.5282594 | 0.076804 | 0 | 0 | 1 | 0 | 0 | 38.70524 | 3 | 3 | GSE163577,syn52293442_hc | 0.2900473 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000181722_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000181722_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000181722_INFLUENCE.png")
ENSG00000182578
Statistics of ENSG00000182578 meta-analisys
kable(sig.genes.df['ENSG00000182578',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000182578 | CSF1R | 1.122482 | 1.314579 | 1.506675 | 0 | 1.807659 | 0.4050156 | 0.0980101 | 0 | 0 | 1 | 0 | 0 | 37.23513 | 3 | 3 | syn52293442_hc | 0.4261992 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000182578_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000182578_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000182578_INFLUENCE.png")
ENSG00000184384
Statistics of ENSG00000184384 meta-analisys
kable(sig.genes.df['ENSG00000184384',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000184384 | MAML2 | 0.5585011 | 0.6684986 | 0.7784961 | 0 | 0.0138819 | 0.9930831 | 0.0561222 | 0 | 0 | 1 | 0 | 0 | 29.06732 | 3 | 3 | non | 0.434981 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000184384_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000184384_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000184384_INFLUENCE.png")
ENSG00000188641
Statistics of ENSG00000188641 meta-analisys
kable(sig.genes.df['ENSG00000188641',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000188641 | DPYD | -0.7310084 | -0.6208863 | -0.5107642 | 0 | 0.7064288 | 0.7024266 | 0.0561858 | 0 | 0 | 1 | 0 | 0 | 24.90541 | 3 | 3 | syn52293442_hc | 0.4307078 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000188641_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000188641_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000188641_INFLUENCE.png")
ENSG00000197520
Statistics of ENSG00000197520 meta-analisys
kable(sig.genes.df['ENSG00000197520',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000197520 | FAM177B | 1.140328 | 1.357514 | 1.574701 | 0 | 0.0712408 | 0.7895386 | 0.1108113 | 0 | 0 | 1 | 0 | 0 | 30.81766 | 2 | 2 | syn52293442_hc | 0.5260029 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000197520_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000197520_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000197520_INFLUENCE.png")
ENSG00000198502
Statistics of ENSG00000198502 meta-analisys
kable(sig.genes.df['ENSG00000198502',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000198502 | HLA-DRB5 | -0.4011408 | -0.3419296 | -0.2827185 | 0 | 0.0056581 | 0.9400397 | 0.0302103 | 0 | 0 | 1 | 0 | 0 | 26.12585 | 2 | 2 | non | 0.5132641 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000198502_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000198502_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000198502_INFLUENCE.png")
ENSG00000226091
Statistics of ENSG00000226091 meta-analisys
kable(sig.genes.df['ENSG00000226091',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000226091 | LINC00937 | -0.932176 | -0.786062 | -0.6399481 | 0 | 0.0185089 | 0.8917837 | 0.0745493 | 0 | 0 | 1 | 0 | 0 | 22.53705 | 2 | 2 | syn52293442_hc | 0.5240867 | syn52293442_hc |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000226091_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000226091_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000226091_INFLUENCE.png")
ENSG00000266258
Statistics of ENSG00000266258 meta-analisys
kable(sig.genes.df['ENSG00000266258',])| SYMBOL | lower_bound | logFC | upper_bound | pvalue | QE | QEp | SE | tau2 | I2 | H2 | p.adjust.fdr | p.adjust.BY | logFDR | n.studies | infl.same.sign.logFC | infl.nstudies | sensi.global | sensi.specific | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ENSG00000266258 | LINC01909 | 0.5270746 | 0.6490589 | 0.7710432 | 0 | 0.4288317 | 0.5125628 | 0.062238 | 0 | 0 | 1 | 0 | 0 | 22.031 | 2 | 2 | syn52293442_hc | 0.5892967 | all.p.values < 0.05 |
Forest plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000266258_FOREST.png")
Funnel plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000266258_FUNNEL.png")
Incluence plot
knitr::include_graphics("/clinicfs/projects/i63/tfm_hipocampo/Metaanalysis_HC/HC/Microglia/F/plots/ENSG00000266258_INFLUENCE.png")
sessionInfo
date()## [1] "Sun May 25 15:35:51 2025"sessionInfo()## R version 4.2.2 (2022-10-31)
## Platform: x86_64-pc-linux-gnu (64-bit)
## Running under: CentOS Linux 7 (Core)
##
## Matrix products: default
## BLAS/LAPACK: /opt/sci-soft/software/FlexiBLAS/3.0.4-GCC-11.2.0/lib64/libflexiblas.so.3.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] plotly_4.10.4 DT_0.26 knitr_1.41 ggplot2_3.5.2 dplyr_1.0.10 limma_3.54.0
## [7] tibble_3.1.8 metafor_3.8-1 metadat_1.2-0 Matrix_1.5-3 Biobase_2.58.0 BiocGenerics_0.44.0
##
## loaded via a namespace (and not attached):
## [1] tidyselect_1.2.0 xfun_0.35 bslib_0.4.2 purrr_0.3.5 lattice_0.20-45 vctrs_0.6.5
## [7] generics_0.1.3 htmltools_0.5.4 viridisLite_0.4.1 yaml_2.3.6 utf8_1.2.2 rlang_1.1.6
## [13] pillar_1.8.1 jquerylib_0.1.4 glue_1.6.2 withr_2.5.0 DBI_1.1.3 RColorBrewer_1.1-3
## [19] lifecycle_1.0.3 stringr_1.5.0 gtable_0.3.1 htmlwidgets_1.6.0 evaluate_0.19 labeling_0.4.2
## [25] fastmap_1.1.0 crosstalk_1.2.0 fansi_1.0.3 highr_0.9 scales_1.4.0 cachem_1.0.6
## [31] jsonlite_1.8.4 farver_2.1.1 png_0.1-8 digest_0.6.31 stringi_1.7.8 grid_4.2.2
## [37] mathjaxr_1.6-0 cli_3.4.1 tools_4.2.2 magrittr_2.0.3 sass_0.4.4 lazyeval_0.2.2
## [43] dichromat_2.0-0.1 tidyr_1.2.1 pkgconfig_2.0.3 ellipsis_0.3.2 data.table_1.14.6 assertthat_0.2.1
## [49] rmarkdown_2.19 httr_1.4.4 rstudioapi_0.14 R6_2.5.1 nlme_3.1-161 compiler_4.2.2